J3_4V5K_001

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5K_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1242

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5K|1|AA|G|46
4V5K|1|AA|C|47
*
4V5K|1|AA|G|361
4V5K|1|AA|G|362
4V5K|1|AA|A|363
4V5K|1|AA|A|364
4V5K|1|AA|U|365
4V5K|1|AA|C|366
4V5K|1|AA|U|367
*
4V5K|1|AA|A|393
4V5K|1|AA|G|394
4V5K|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain DI

50S RIBOSOMAL PROTEIN L9