J3_4V5K_009

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGC*GGACUGCC*GGAGGAAGGAG

Length

22 nucleotides

Bulged bases

4V5K|1|AA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|AA|C|1116
4V5K|1|AA|G|1117
4V5K|1|AA|C|1118
*
4V5K|1|AA|G|1155
4V5K|1|AA|G|1156
4V5K|1|AA|A|1157
4V5K|1|AA|C|1158
4V5K|1|AA|U|1159
4V5K|1|AA|G|1160
4V5K|1|AA|C|1161
4V5K|1|AA|C|1162
*
4V5K|1|AA|G|1174
4V5K|1|AA|G|1175
4V5K|1|AA|A|1176
4V5K|1|AA|G|1177
4V5K|1|AA|G|1178
4V5K|1|AA|A|1179
4V5K|1|AA|A|1180
4V5K|1|AA|G|1181
4V5K|1|AA|G|1182
4V5K|1|AA|A|1183
4V5K|1|AA|G|1184

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z