J3_4V5K_056

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGGAAU*GGAACGCCGAUGG*CAG

Length

22 nucleotides

Bulged bases

4V5K|1|CA|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|CA|U|672
4V5K|1|CA|G|673
4V5K|1|CA|G|674
4V5K|1|CA|A|675
4V5K|1|CA|A|676
4V5K|1|CA|U|677
*
4V5K|1|CA|G|713
4V5K|1|CA|G|714
4V5K|1|CA|A|715
4V5K|1|CA|A|716
4V5K|1|CA|C|717
4V5K|1|CA|G|718
4V5K|1|CA|C|719
4V5K|1|CA|C|720
4V5K|1|CA|G|721
4V5K|1|CA|A|722
4V5K|1|CA|U|723
4V5K|1|CA|G|724
4V5K|1|CA|G|725
*
4V5K|1|CA|C|732
4V5K|1|CA|A|733
4V5K|1|CA|G|734

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CF

30S RIBOSOMAL PROTEIN S6

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain CO

30S RIBOSOMAL PROTEIN S15

Chain CR

30S RIBOSOMAL PROTEIN S18

Chain DD

50S RIBOSOMAL PROTEIN L2