J3_4V5K_058

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UG*UGUUGGG*CCCGCAA

Length

16 nucleotides

Bulged bases

4V5K|1|CA|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|CA|U|1073
4V5K|1|CA|G|1074
*
4V5K|1|CA|U|1083
4V5K|1|CA|G|1084
4V5K|1|CA|U|1085
4V5K|1|CA|U|1086
4V5K|1|CA|G|1087
4V5K|1|CA|G|1088
4V5K|1|CA|G|1089
*
4V5K|1|CA|C|1096
4V5K|1|CA|C|1097
4V5K|1|CA|C|1098
4V5K|1|CA|G|1099
4V5K|1|CA|C|1100
4V5K|1|CA|A|1101
4V5K|1|CA|A|1102

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CE

30S RIBOSOMAL PROTEIN S5