3D structure

PDB id
4V5P (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5P_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0561
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

4V5P|1|AA|C|936
4V5P|1|AA|A|937
4V5P|1|AA|A|938
4V5P|1|AA|G|939
*
4V5P|1|AA|C|1344
4V5P|1|AA|U|1345
4V5P|1|AA|A|1346
4V5P|1|AA|G|1347
4V5P|1|AA|U|1348
4V5P|1|AA|A|1349
4V5P|1|AA|A|1350
*
4V5P|1|AA|U|1372
4V5P|1|AA|G|1373
4V5P|1|AA|A|1374
4V5P|1|AA|A|1375
4V5P|1|AA|U|1376
4V5P|1|AA|A|1377
4V5P|1|AA|C|1378
4V5P|1|AA|G|1379

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AG
30S RIBOSOMAL PROTEIN S7
Chain AI
30S RIBOSOMAL PROTEIN S9
Chain AW
Transfer RNA; tRNA

Coloring options:


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