J3_4V5P_007
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4V5P|1|AA|A|975, 4V5P|1|AA|G|976, 4V5P|1|AA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5P_007 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0573
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V5P|1|AA|U|955
4V5P|1|AA|U|956
4V5P|1|AA|U|957
4V5P|1|AA|A|958
4V5P|1|AA|A|959
4V5P|1|AA|U|960
4V5P|1|AA|U|961
4V5P|1|AA|C|962
*
4V5P|1|AA|G|973
4V5P|1|AA|A|974
4V5P|1|AA|A|975
4V5P|1|AA|G|976
4V5P|1|AA|A|977
4V5P|1|AA|A|978
4V5P|1|AA|C|979
4V5P|1|AA|C|980
4V5P|1|AA|U|981
4V5P|1|AA|U|982
4V5P|1|AA|A|983
4V5P|1|AA|C|984
*
4V5P|1|AA|G|1221
4V5P|1|AA|G|1222
4V5P|1|AA|C|1223
4V5P|1|AA|G|1224
4V5P|1|AA|A|1225
Current chains
- Chain AA
- 16S RRNA
Nearby chains
- Chain AJ
- 30S RIBOSOMAL PROTEIN S10
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AN
- 30S RIBOSOMAL PROTEIN S14
- Chain AS
- 30S RIBOSOMAL PROTEIN S19
- Chain AY
- Transfer RNA; tRNA
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