J3_4V5P_026

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5P_026 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1116

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5P|1|CA|G|46
4V5P|1|CA|C|47
*
4V5P|1|CA|G|361
4V5P|1|CA|G|362
4V5P|1|CA|A|363
4V5P|1|CA|A|364
4V5P|1|CA|U|365
4V5P|1|CA|C|366
4V5P|1|CA|U|367
*
4V5P|1|CA|A|393
4V5P|1|CA|G|394
4V5P|1|CA|C|395

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CP

30S RIBOSOMAL PROTEIN S16

Chain CZ

ELONGATION FACTOR TU