J3_4V5P_035

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5P_035 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.2027

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5P|1|CA|U|1073
4V5P|1|CA|G|1074
*
4V5P|1|CA|U|1083
4V5P|1|CA|G|1084
4V5P|1|CA|U|1085
4V5P|1|CA|U|1086
4V5P|1|CA|G|1087
*
4V5P|1|CA|C|1098
4V5P|1|CA|G|1099
4V5P|1|CA|C|1100
4V5P|1|CA|A|1101
4V5P|1|CA|A|1102

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CE

30S RIBOSOMAL PROTEIN S5