J3_4V5P_040

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4V5P|1|DA|U|272|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5P_040 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.0849

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V5P|1|DA|U|269
4V5P|1|DA|A|270
4V5P|1|DA|A|271
4V5P|1|DA|A|271|||A
4V5P|1|DA|C|271|||B
*
4V5P|1|DA|G|271|||V
4V5P|1|DA|G|271|||W
4V5P|1|DA|G|271|||X
4V5P|1|DA|U|271|||Y
4V5P|1|DA|C|271|||Z
4V5P|1|DA|G|272
4V5P|1|DA|U|272|||A
4V5P|1|DA|G|272|||B
*
4V5P|1|DA|C|366
4V5P|1|DA|G|370

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains