J3_4V5P_050
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4V5P|1|DB|U|14, 4V5P|1|DB|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5P_050 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.158
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V5P|1|DB|C|11
4V5P|1|DB|C|12
4V5P|1|DB|A|13
4V5P|1|DB|U|14
4V5P|1|DB|A|15
4V5P|1|DB|G|16
*
4V5P|1|DB|C|68
4V5P|1|DB|G|69
*
4V5P|1|DB|U|108
4V5P|1|DB|C|109
4V5P|1|DB|G|110
Current chains
- Chain DB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain D0
- 50S RIBOSOMAL PROTEIN L27
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: