J3_4V5Q_045
3D structure
- PDB id
- 4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 4V5Q|1|DA|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5Q_045 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.105
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V5Q|1|DA|C|1306
4V5Q|1|DA|A|1307
4V5Q|1|DA|A|1308
4V5Q|1|DA|G|1309
*
4V5Q|1|DA|C|1605
4V5Q|1|DA|G|1606
4V5Q|1|DA|C|1607
4V5Q|1|DA|A|1608
4V5Q|1|DA|A|1609
4V5Q|1|DA|A|1610
4V5Q|1|DA|C|1611
*
4V5Q|1|DA|G|1620
4V5Q|1|DA|U|1621
4V5Q|1|DA|G|1622
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain D7
- 50S RIBOSOMAL PROTEIN L34
Coloring options: