J3_4V64_065

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V64_065 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.182

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V64|1|CA|C|990
4V64|1|CA|U|991
4V64|1|CA|U|992
4V64|1|CA|G|993
4V64|1|CA|A|994
4V64|1|CA|C|995
4V64|1|CA|A|996
4V64|1|CA|U|997
*
4V64|1|CA|A|1044
4V64|1|CA|C|1045
4V64|1|CA|A|1046
4V64|1|CA|G|1047
*
4V64|1|CA|C|1210
4V64|1|CA|U|1211
4V64|1|CA|U|1212
4V64|1|CA|A|1213
4V64|1|CA|C|1214
4V64|1|CA|G|1215

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain CN

30S ribosomal protein S14