J3_4V67_001

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V67_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1215

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V67|1|AA|G|46
4V67|1|AA|C|47
*
4V67|1|AA|G|361
4V67|1|AA|G|362
4V67|1|AA|A|363
4V67|1|AA|A|364
4V67|1|AA|U|365
4V67|1|AA|C|366
4V67|1|AA|U|367
*
4V67|1|AA|A|393
4V67|1|AA|G|394
4V67|1|AA|C|395

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain DI

50S ribosomal protein L9