3D structure

PDB id
4V67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a translation termination complex formed with release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
4V67|1|BA|A|2388, 4V67|1|BA|U|2390, 4V67|1|BA|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V67_065 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.1136
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4V67|1|BA|G|2282
4V67|1|BA|C|2283
4V67|1|BA|C|2284
*
4V67|1|BA|G|2384
4V67|1|BA|C|2385
4V67|1|BA|C|2386
4V67|1|BA|U|2387
4V67|1|BA|A|2388
4V67|1|BA|G|2389
4V67|1|BA|U|2390
4V67|1|BA|G|2391
4V67|1|BA|A|2392
4V67|1|BA|A|2393
4V67|1|BA|C|2394
4V67|1|BA|C|2395
*
4V67|1|BA|G|2421
4V67|1|BA|A|2422
4V67|1|BA|U|2423
4V67|1|BA|C|2424
4V67|1|BA|A|2425
4V67|1|BA|A|2426
4V67|1|BA|C|2427

Current chains

Chain BA
23S RRNA

Nearby chains

Chain AZ
Transfer RNA; tRNA
Chain B0
50S ribosomal protein L27
Chain B1
50S ribosomal protein L28
Chain B6
50S ribosomal protein L33
Chain B8
50S ribosomal protein L35
Chain BP
50S ribosomal protein L15

Coloring options:


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