3D structure

PDB id
4V6A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of EF-P bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AC*GAUAAGC*GAUGU
Length
14 nucleotides
Bulged bases
4V6A|1|DA|U|72, 4V6A|1|DA|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6A_067 not in the Motif Atlas
Homologous match to J3_7A0S_002
Geometric discrepancy: 0.1209
The information below is about J3_7A0S_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

4V6A|1|DA|A|56
4V6A|1|DA|C|57
*
4V6A|1|DA|G|70
4V6A|1|DA|A|71
4V6A|1|DA|U|72
4V6A|1|DA|A|73
4V6A|1|DA|A|74
4V6A|1|DA|G|75
4V6A|1|DA|C|76
*
4V6A|1|DA|G|110
4V6A|1|DA|A|111
4V6A|1|DA|U|112
4V6A|1|DA|G|113
4V6A|1|DA|U|114

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain D2
50S ribosomal protein L29
Chain D7
50S ribosomal protein L34
Chain DX
50S ribosomal protein L23

Coloring options:


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