J3_4V6C_056

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V6C|1|AA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6C_056 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0984

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V6C|1|AA|C|990
4V6C|1|AA|U|991
4V6C|1|AA|U|992
4V6C|1|AA|G|993
4V6C|1|AA|A|994
4V6C|1|AA|C|995
4V6C|1|AA|A|996
4V6C|1|AA|U|997
*
4V6C|1|AA|A|1044
4V6C|1|AA|C|1045
4V6C|1|AA|A|1046
4V6C|1|AA|G|1047
*
4V6C|1|AA|C|1210
4V6C|1|AA|U|1211
4V6C|1|AA|U|1212
4V6C|1|AA|A|1213
4V6C|1|AA|C|1214
4V6C|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14