J3_4V6D_031

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6D_031 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1013

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V6D|1|CA|C|936
4V6D|1|CA|A|937
4V6D|1|CA|A|938
4V6D|1|CA|G|939
*
4V6D|1|CA|C|1344
4V6D|1|CA|U|1345
4V6D|1|CA|A|1346
4V6D|1|CA|G|1347
4V6D|1|CA|U|1348
4V6D|1|CA|A|1349
4V6D|1|CA|A|1350
*
4V6D|1|CA|U|1372
4V6D|1|CA|G|1373
4V6D|1|CA|A|1374
4V6D|1|CA|A|1375
4V6D|1|CA|U|1376
4V6D|1|CA|A|1377
4V6D|1|CA|C|1378
4V6D|1|CA|G|1379

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9