3D structure

PDB id
4V6D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.81 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6D_055 not in the Motif Atlas
Homologous match to J3_5J7L_053
Geometric discrepancy: 0.1067
The information below is about J3_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

4V6D|1|AA|C|990
4V6D|1|AA|U|991
4V6D|1|AA|U|992
4V6D|1|AA|G|993
4V6D|1|AA|A|994
4V6D|1|AA|C|995
4V6D|1|AA|A|996
4V6D|1|AA|U|997
*
4V6D|1|AA|A|1044
4V6D|1|AA|C|1045
4V6D|1|AA|A|1046
4V6D|1|AA|G|1047
*
4V6D|1|AA|C|1210
4V6D|1|AA|U|1211
4V6D|1|AA|U|1212
4V6D|1|AA|A|1213
4V6D|1|AA|C|1214
4V6D|1|AA|G|1215

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AN
30S ribosomal protein S14

Coloring options:


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