J3_4V6E_042

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4V6E|1|DA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6E_042 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1364

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6E|1|DA|A|56
4V6E|1|DA|C|57
*
4V6E|1|DA|G|70
4V6E|1|DA|A|71
4V6E|1|DA|U|72
4V6E|1|DA|A|73
4V6E|1|DA|A|74
4V6E|1|DA|G|75
4V6E|1|DA|C|76
*
4V6E|1|DA|G|110
4V6E|1|DA|A|111
4V6E|1|DA|U|112
4V6E|1|DA|U|113
4V6E|1|DA|U|114

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23

Chain DY

50S ribosomal protein L29