J3_4V6E_065

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

4V6E|1|CA|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6E_065 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1294

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6E|1|CA|U|1116
4V6E|1|CA|A|1117
4V6E|1|CA|U|1118
*
4V6E|1|CA|A|1155
4V6E|1|CA|G|1156
4V6E|1|CA|A|1157
4V6E|1|CA|C|1158
4V6E|1|CA|U|1159
4V6E|1|CA|G|1160
4V6E|1|CA|C|1161
*
4V6E|1|CA|G|1175
4V6E|1|CA|A|1176
4V6E|1|CA|G|1177
4V6E|1|CA|G|1178
4V6E|1|CA|A|1179
4V6E|1|CA|A|1180
4V6E|1|CA|G|1181
4V6E|1|CA|G|1182
4V6E|1|CA|U|1183
4V6E|1|CA|G|1184

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14