3D structure

PDB id
4V6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
4V6E|1|CA|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6E_065 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1294
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V6E|1|CA|U|1116
4V6E|1|CA|A|1117
4V6E|1|CA|U|1118
*
4V6E|1|CA|A|1155
4V6E|1|CA|G|1156
4V6E|1|CA|A|1157
4V6E|1|CA|C|1158
4V6E|1|CA|U|1159
4V6E|1|CA|G|1160
4V6E|1|CA|C|1161
*
4V6E|1|CA|G|1175
4V6E|1|CA|A|1176
4V6E|1|CA|G|1177
4V6E|1|CA|G|1178
4V6E|1|CA|A|1179
4V6E|1|CA|A|1180
4V6E|1|CA|G|1181
4V6E|1|CA|G|1182
4V6E|1|CA|U|1183
4V6E|1|CA|G|1184

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CB
30S ribosomal protein S2
Chain CG
30S ribosomal protein S7
Chain CI
30S ribosomal protein S9
Chain CJ
30S ribosomal protein S10
Chain CN
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.8119 s