J3_4V6F_004

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V6F|1|AA|G|686, 4V6F|1|AA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6F_004 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0944

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6F|1|AA|C|683
4V6F|1|AA|G|684
4V6F|1|AA|A|685
4V6F|1|AA|G|686
4V6F|1|AA|C|687
4V6F|1|AA|U|688
4V6F|1|AA|A|689
*
4V6F|1|AA|U|773
4V6F|1|AA|A|774
4V6F|1|AA|G|775
*
4V6F|1|AA|C|791
4V6F|1|AA|G|792
4V6F|1|AA|A|793
4V6F|1|AA|G|794

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain A7

50S RIBOSOMAL PROTEIN L34

Chain AD

50S RIBOSOMAL PROTEIN L2