J3_4V6F_005

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6F_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0599

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V6F|1|AA|C|698
4V6F|1|AA|A|699
4V6F|1|AA|G|700
*
4V6F|1|AA|C|732
4V6F|1|AA|G|733
4V6F|1|AA|A|734
4V6F|1|AA|A|735
4V6F|1|AA|C|736
*
4V6F|1|AA|G|760
4V6F|1|AA|A|761
4V6F|1|AA|U|762
4V6F|1|AA|G|763

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2