J3_4V6F_015
3D structure
- PDB id
- 4V6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation complex of the 70S ribosome with three tRNAs and mRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4V6F|1|AB|U|14, 4V6F|1|AB|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6F_015 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.174
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V6F|1|AB|C|11
4V6F|1|AB|C|12
4V6F|1|AB|A|13
4V6F|1|AB|U|14
4V6F|1|AB|A|15
4V6F|1|AB|G|16
*
4V6F|1|AB|C|68
4V6F|1|AB|G|69
*
4V6F|1|AB|U|107
4V6F|1|AB|C|108
4V6F|1|AB|G|109
Current chains
- Chain AB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 50S RIBOSOMAL PROTEIN L27
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 50S RIBOSOMAL PROTEIN L18
- Chain AV
- 50S RIBOSOMAL PROTEIN L25
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