J3_4V6F_030

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6F_030 not in the Motif Atlas

Geometric match to J3_6CZR_016

Geometric discrepancy: 0.1718

The information below is about J3_6CZR_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.4

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

4V6F|1|CA|C|586
4V6F|1|CA|G|587
4V6F|1|CA|G|588
*
4V6F|1|CA|C|651
4V6F|1|CA|U|652
4V6F|1|CA|A|653
4V6F|1|CA|G|654
*
4V6F|1|CA|C|754
4V6F|1|CA|G|755

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S ribosomal protein S8

Chain CO

30S ribosomal protein S12

Chain CR

30S ribosomal protein S15

Chain CT

30S ribosomal protein S17