J3_4V6F_058

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGUGGCUACCU*AGC*GAUGU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6F_058 not in the Motif Atlas

Homologous match to J3_4WF9_001

Geometric discrepancy: 0.1747

The information below is about J3_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47707.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F

Number of instances in this motif group

1

Unit IDs

4V6F|1|AA|A|56
4V6F|1|AA|C|57
4V6F|1|AA|G|58
4V6F|1|AA|U|59
4V6F|1|AA|G|60
4V6F|1|AA|G|61
4V6F|1|AA|C|62
4V6F|1|AA|U|63
4V6F|1|AA|A|64
4V6F|1|AA|C|65
4V6F|1|AA|C|66
4V6F|1|AA|U|67
*
4V6F|1|AA|A|74
4V6F|1|AA|G|75
4V6F|1|AA|C|76
*
4V6F|1|AA|G|110
4V6F|1|AA|A|111
4V6F|1|AA|U|112
4V6F|1|AA|G|113
4V6F|1|AA|U|114

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain A7

50S RIBOSOMAL PROTEIN L34

Chain AT

50S RIBOSOMAL PROTEIN L23

Chain AW

50S RIBOSOMAL PROTEIN L29