J3_4V7K_036

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4V7K|1|AA|U|72, 4V7K|1|AA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7K_036 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.1073

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V7K|1|AA|A|56
4V7K|1|AA|C|57
*
4V7K|1|AA|G|70
4V7K|1|AA|A|71
4V7K|1|AA|U|72
4V7K|1|AA|A|73
4V7K|1|AA|A|74
4V7K|1|AA|G|75
4V7K|1|AA|C|76
*
4V7K|1|AA|G|110
4V7K|1|AA|A|111
4V7K|1|AA|U|112
4V7K|1|AA|G|113
4V7K|1|AA|U|114

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A2

50S ribosomal protein L29

Chain A7

50S ribosomal protein L34

Chain AX

50S ribosomal protein L23