3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
4V7K|1|AA|A|2388, 4V7K|1|AA|U|2390, 4V7K|1|AA|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7K_041 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.1097
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4V7K|1|AA|G|2282
4V7K|1|AA|C|2283
4V7K|1|AA|C|2284
*
4V7K|1|AA|G|2384
4V7K|1|AA|C|2385
4V7K|1|AA|C|2386
4V7K|1|AA|U|2387
4V7K|1|AA|A|2388
4V7K|1|AA|G|2389
4V7K|1|AA|U|2390
4V7K|1|AA|G|2391
4V7K|1|AA|A|2392
4V7K|1|AA|A|2393
4V7K|1|AA|C|2394
4V7K|1|AA|C|2395
*
4V7K|1|AA|G|2421
4V7K|1|AA|A|2422
4V7K|1|AA|U|2423
4V7K|1|AA|C|2424
4V7K|1|AA|A|2425
4V7K|1|AA|A|2426
4V7K|1|AA|C|2427

Current chains

Chain AA
RNA (2848-MER)

Nearby chains

Chain A0
50S ribosomal protein L27
Chain A1
50S ribosomal protein L28
Chain A6
50S ribosomal protein L33
Chain A8
50S ribosomal protein L35
Chain AP
50S ribosomal protein L15
Chain Aw
Transfer RNA; tRNA

Coloring options:


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