3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7L_026 not in the Motif Atlas
Homologous match to J3_5J7L_039
Geometric discrepancy: 0.1122
The information below is about J3_5J7L_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

4V7L|1|DA|C|698
4V7L|1|DA|A|699
4V7L|1|DA|G|700
*
4V7L|1|DA|C|732
4V7L|1|DA|G|733
4V7L|1|DA|A|734
4V7L|1|DA|A|735
4V7L|1|DA|C|736
*
4V7L|1|DA|G|760
4V7L|1|DA|A|761
4V7L|1|DA|U|762
4V7L|1|DA|G|763

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain D7
50S ribosomal protein L34
Chain DD
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5858 s