J3_4V7L_039

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUCGCCAAGCGGUAAGGCAC*GCAUUCC*GU

Length

29 nucleotides

Bulged bases

4V7L|1|AW|C|16, 4V7L|1|AW|G|17, 4V7L|1|AW|G|18, 4V7L|1|AW|U|19, 4V7L|1|AW|C|43, 4V7L|1|AW|U|45, 4V7L|1|AW|U|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7L|1|AW|A|7
4V7L|1|AW|U|8
4V7L|1|AW|C|9
4V7L|1|AW|G|10
4V7L|1|AW|C|11
4V7L|1|AW|C|12
4V7L|1|AW|A|13
4V7L|1|AW|A|14
4V7L|1|AW|G|15
4V7L|1|AW|C|16
4V7L|1|AW|G|17
4V7L|1|AW|G|18
4V7L|1|AW|U|19
4V7L|1|AW|A|20
4V7L|1|AW|A|21
4V7L|1|AW|G|22
4V7L|1|AW|G|23
4V7L|1|AW|C|24
4V7L|1|AW|A|25
4V7L|1|AW|C|26
*
4V7L|1|AW|G|42
4V7L|1|AW|C|43
4V7L|1|AW|A|44
4V7L|1|AW|U|45
4V7L|1|AW|U|46
4V7L|1|AW|C|47
4V7L|1|AW|C|48
*
4V7L|1|AW|G|64
4V7L|1|AW|U|65

Current chains

Chain AW

tRNA-Gln

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AZ

Viomycin

Chain BA

Large subunit ribosomal RNA; LSU rRNA