3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7P_011 not in the Motif Atlas
Homologous match to J3_4WF9_003
Geometric discrepancy: 0.1075
The information below is about J3_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

4V7P|1|BA|C|698
4V7P|1|BA|A|699
4V7P|1|BA|G|700
*
4V7P|1|BA|C|732
4V7P|1|BA|G|733
4V7P|1|BA|A|734
4V7P|1|BA|A|735
4V7P|1|BA|C|736
*
4V7P|1|BA|G|760
4V7P|1|BA|A|761
4V7P|1|BA|U|762
4V7P|1|BA|G|763

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L34
Chain BC
50S ribosomal protein L2

Coloring options:


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