3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CAAG*CGCAAAC*GUG
Length
14 nucleotides
Bulged bases
4V7P|1|CA|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7P_023 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.1082
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

4V7P|1|CA|C|1306
4V7P|1|CA|A|1307
4V7P|1|CA|A|1308
4V7P|1|CA|G|1309
*
4V7P|1|CA|C|1605
4V7P|1|CA|G|1606
4V7P|1|CA|C|1607
4V7P|1|CA|A|1608
4V7P|1|CA|A|1609
4V7P|1|CA|A|1610
4V7P|1|CA|C|1611
*
4V7P|1|CA|G|1620
4V7P|1|CA|U|1621
4V7P|1|CA|G|1622

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain C4
50S ribosomal protein L34

Coloring options:


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