J3_4V7P_045

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CAAUG*CCCAGUUCGGAUU*AUGAAGCCG

Length

27 nucleotides

Bulged bases

4V7P|1|AA|U|1240, 4V7P|1|AA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7P|1|AA|C|1237
4V7P|1|AA|A|1238
4V7P|1|AA|A|1239
4V7P|1|AA|U|1240
4V7P|1|AA|G|1241
*
4V7P|1|AA|C|1296
4V7P|1|AA|C|1297
4V7P|1|AA|C|1298
4V7P|1|AA|A|1299
4V7P|1|AA|G|1300
4V7P|1|AA|U|1301
4V7P|1|AA|U|1302
4V7P|1|AA|C|1303
4V7P|1|AA|G|1304
4V7P|1|AA|G|1305
4V7P|1|AA|A|1306
4V7P|1|AA|U|1307
4V7P|1|AA|U|1308
*
4V7P|1|AA|A|1329
4V7P|1|AA|U|1330
4V7P|1|AA|G|1331
4V7P|1|AA|A|1332
4V7P|1|AA|A|1333
4V7P|1|AA|G|1334
4V7P|1|AA|C|1335
4V7P|1|AA|C|1336
4V7P|1|AA|G|1337

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13

Chain AU

30S ribosomal protein Thx