3D structure

PDB id
4V7U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to erythromycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUAAUC*GAGGUUAG*CAUAAG
Length
20 nucleotides
Bulged bases
4V7U|1|DA|U|2334, 4V7U|1|DA|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V7U|1|DA|C|2295
4V7U|1|DA|U|2296
4V7U|1|DA|A|2297
4V7U|1|DA|A|2298
4V7U|1|DA|U|2299
4V7U|1|DA|C|2300
*
4V7U|1|DA|G|2316
4V7U|1|DA|A|2317
4V7U|1|DA|G|2318
4V7U|1|DA|G|2319
4V7U|1|DA|U|2320
4V7U|1|DA|U|2321
4V7U|1|DA|A|2322
4V7U|1|DA|G|2323
*
4V7U|1|DA|C|2332
4V7U|1|DA|A|2333
4V7U|1|DA|U|2334
4V7U|1|DA|A|2335
4V7U|1|DA|A|2336
4V7U|1|DA|G|2337

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DB
5S ribosomal RNA; 5S rRNA
Chain DF
50S ribosomal protein L5
Chain DO
50S ribosomal protein L18
Chain DW
50S ribosomal protein L27

Coloring options:

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