J3_4V7V_010

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V7V|1|BA|U|686, 4V7V|1|BA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7V_010 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0764

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V7V|1|BA|U|683
4V7V|1|BA|G|684
4V7V|1|BA|A|685
4V7V|1|BA|U|686
4V7V|1|BA|C|687
4V7V|1|BA|U|688
4V7V|1|BA|A|689
*
4V7V|1|BA|U|773
4V7V|1|BA|G|774
4V7V|1|BA|G|775
*
4V7V|1|BA|C|791
4V7V|1|BA|A|792
4V7V|1|BA|A|793
4V7V|1|BA|A|794

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2