J3_4V7V_044

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7V_044 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1085

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V7V|1|AA|C|990
4V7V|1|AA|U|991
4V7V|1|AA|U|992
4V7V|1|AA|G|993
4V7V|1|AA|A|994
4V7V|1|AA|C|995
4V7V|1|AA|A|996
4V7V|1|AA|U|997
*
4V7V|1|AA|A|1044
4V7V|1|AA|C|1045
4V7V|1|AA|A|1046
4V7V|1|AA|G|1047
*
4V7V|1|AA|C|1210
4V7V|1|AA|U|1211
4V7V|1|AA|U|1212
4V7V|1|AA|A|1213
4V7V|1|AA|C|1214
4V7V|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14