J3_4V7W_010

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7W_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0588

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V7W|1|BA|C|698
4V7W|1|BA|A|699
4V7W|1|BA|G|700
*
4V7W|1|BA|C|732
4V7W|1|BA|G|733
4V7W|1|BA|A|734
4V7W|1|BA|A|735
4V7W|1|BA|C|736
*
4V7W|1|BA|G|760
4V7W|1|BA|A|761
4V7W|1|BA|U|762
4V7W|1|BA|G|763

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2