3D structure

PDB id
4V7W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4V7W|1|CA|A|975, 4V7W|1|CA|G|976, 4V7W|1|CA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7W_019 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.1003
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V7W|1|CA|U|955
4V7W|1|CA|U|956
4V7W|1|CA|U|957
4V7W|1|CA|A|958
4V7W|1|CA|A|959
4V7W|1|CA|U|960
4V7W|1|CA|U|961
4V7W|1|CA|C|962
*
4V7W|1|CA|G|973
4V7W|1|CA|A|974
4V7W|1|CA|A|975
4V7W|1|CA|G|976
4V7W|1|CA|A|977
4V7W|1|CA|A|978
4V7W|1|CA|C|979
4V7W|1|CA|C|980
4V7W|1|CA|U|981
4V7W|1|CA|U|982
4V7W|1|CA|A|983
4V7W|1|CA|C|984
*
4V7W|1|CA|G|1221
4V7W|1|CA|G|1222
4V7W|1|CA|C|1223
4V7W|1|CA|G|1224
4V7W|1|CA|A|1225

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CJ
30S ribosomal protein S10
Chain CM
30S ribosomal protein S13
Chain CN
30S ribosomal protein S14
Chain CS
30S ribosomal protein S19

Coloring options:


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