J3_4V7W_050

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7W_050 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0939

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7W|1|CA|G|46
4V7W|1|CA|C|47
*
4V7W|1|CA|G|361
4V7W|1|CA|G|362
4V7W|1|CA|A|363
4V7W|1|CA|A|364
4V7W|1|CA|U|365
4V7W|1|CA|C|366
4V7W|1|CA|U|367
*
4V7W|1|CA|A|393
4V7W|1|CA|G|394
4V7W|1|CA|C|395

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16