J3_4V83_056

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

4V83|1|CA|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V83_056 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0966

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V83|1|CA|C|936
4V83|1|CA|A|937
4V83|1|CA|A|938
4V83|1|CA|G|939
*
4V83|1|CA|C|1344
4V83|1|CA|U|1345
4V83|1|CA|A|1346
4V83|1|CA|G|1347
4V83|1|CA|U|1348
4V83|1|CA|A|1349
4V83|1|CA|A|1350
*
4V83|1|CA|U|1372
4V83|1|CA|G|1373
4V83|1|CA|A|1374
4V83|1|CA|A|1375
4V83|1|CA|U|1376
4V83|1|CA|A|1377
4V83|1|CA|C|1378
4V83|1|CA|G|1379

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9