J3_4V84_006

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUG*UGUUG*CGCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|AA|G|1072
4V84|1|AA|U|1073
4V84|1|AA|G|1074
*
4V84|1|AA|U|1083
4V84|1|AA|G|1084
4V84|1|AA|U|1085
4V84|1|AA|U|1086
4V84|1|AA|G|1087
*
4V84|1|AA|C|1098
4V84|1|AA|G|1099
4V84|1|AA|C|1100
4V84|1|AA|A|1101
4V84|1|AA|A|1102
4V84|1|AA|C|1103

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5