J3_4V84_018

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAC*GGUGC*GAGCC

Length

15 nucleotides

Bulged bases

4V84|1|CA|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|CA|G|1002
4V84|1|CA|G|1003
4V84|1|CA|A|1004
4V84|1|CA|A|1005
4V84|1|CA|C|1006
*
4V84|1|CA|G|1023
4V84|1|CA|G|1024
4V84|1|CA|U|1025
4V84|1|CA|G|1026
4V84|1|CA|C|1027
*
4V84|1|CA|G|1034
4V84|1|CA|A|1035
4V84|1|CA|G|1036
4V84|1|CA|C|1037
4V84|1|CA|C|1038

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains