J3_4V84_022

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V84|1|DA|G|686, 4V84|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V84_022 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0989

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V84|1|DA|C|683
4V84|1|DA|G|684
4V84|1|DA|A|685
4V84|1|DA|G|686
4V84|1|DA|C|687
4V84|1|DA|U|688
4V84|1|DA|A|689
*
4V84|1|DA|U|773
4V84|1|DA|A|774
4V84|1|DA|G|775
*
4V84|1|DA|C|791
4V84|1|DA|G|792
4V84|1|DA|A|793
4V84|1|DA|G|794

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2