J3_4V84_025

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V84|1|DA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V84_025 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0775

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V84|1|DA|C|1306
4V84|1|DA|A|1307
4V84|1|DA|A|1308
4V84|1|DA|G|1309
*
4V84|1|DA|C|1605
4V84|1|DA|G|1606
4V84|1|DA|C|1607
4V84|1|DA|A|1608
4V84|1|DA|A|1609
4V84|1|DA|A|1610
4V84|1|DA|C|1611
*
4V84|1|DA|G|1620
4V84|1|DA|U|1621
4V84|1|DA|G|1622

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L34