J3_4V84_053

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

4V84|1|CA|C|48, 4V84|1|CA|A|50, 4V84|1|CA|A|51, 4V84|1|CA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|CA|G|46
4V84|1|CA|C|47
4V84|1|CA|C|48
4V84|1|CA|U|49
4V84|1|CA|A|50
4V84|1|CA|A|51
4V84|1|CA|G|52
*
4V84|1|CA|U|359
4V84|1|CA|A|360
4V84|1|CA|G|361
4V84|1|CA|G|362
4V84|1|CA|A|363
4V84|1|CA|A|364
4V84|1|CA|U|365
4V84|1|CA|C|366
4V84|1|CA|U|367
4V84|1|CA|U|368
4V84|1|CA|C|369
*
4V84|1|CA|G|392
4V84|1|CA|A|393
4V84|1|CA|G|394
4V84|1|CA|C|395

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16