J3_4V84_057

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCACAAGC*GCUAGUAAUC*GGUGAAUACGUUCCC

Length

33 nucleotides

Bulged bases

4V84|1|CA|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|CA|G|933
4V84|1|CA|C|934
4V84|1|CA|A|935
4V84|1|CA|C|936
4V84|1|CA|A|937
4V84|1|CA|A|938
4V84|1|CA|G|939
4V84|1|CA|C|940
*
4V84|1|CA|G|1343
4V84|1|CA|C|1344
4V84|1|CA|U|1345
4V84|1|CA|A|1346
4V84|1|CA|G|1347
4V84|1|CA|U|1348
4V84|1|CA|A|1349
4V84|1|CA|A|1350
4V84|1|CA|U|1351
4V84|1|CA|C|1352
*
4V84|1|CA|G|1370
4V84|1|CA|G|1371
4V84|1|CA|U|1372
4V84|1|CA|G|1373
4V84|1|CA|A|1374
4V84|1|CA|A|1375
4V84|1|CA|U|1376
4V84|1|CA|A|1377
4V84|1|CA|C|1378
4V84|1|CA|G|1379
4V84|1|CA|U|1380
4V84|1|CA|U|1381
4V84|1|CA|C|1382
4V84|1|CA|C|1383
4V84|1|CA|C|1384

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z

Chain CU

30S ribosomal protein Thx

Chain CV

RNA (34-MER)