J3_4V87_072
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V87|1|DA|A|2388, 4V87|1|DA|U|2390, 4V87|1|DA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V87_072 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1069
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V87|1|DA|G|2282
4V87|1|DA|C|2283
4V87|1|DA|C|2284
*
4V87|1|DA|G|2384
4V87|1|DA|C|2385
4V87|1|DA|C|2386
4V87|1|DA|U|2387
4V87|1|DA|A|2388
4V87|1|DA|G|2389
4V87|1|DA|U|2390
4V87|1|DA|G|2391
4V87|1|DA|A|2392
4V87|1|DA|A|2393
4V87|1|DA|C|2394
4V87|1|DA|C|2395
*
4V87|1|DA|G|2421
4V87|1|DA|A|2422
4V87|1|DA|U|2423
4V87|1|DA|C|2424
4V87|1|DA|A|2425
4V87|1|DA|A|2426
4V87|1|DA|C|2427
Current chains
- Chain DA
- RNA (2909-MER)
Nearby chains
- Chain CD
- Transfer RNA; tRNA
- Chain D3
- 50S ribosomal protein L27
- Chain D6
- 50S ribosomal protein L33
- Chain D8
- 50S ribosomal protein L35
- Chain DO
- 50S ribosomal protein L15
- Chain DZ
- 50S ribosomal protein L28
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