J3_4V87_079

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

4V87|1|DA|A|1084, 4V87|1|DA|A|1088, 4V87|1|DA|G|1089

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V87|1|DA|G|1055
4V87|1|DA|G|1056
4V87|1|DA|A|1057
*
4V87|1|DA|U|1081
4V87|1|DA|U|1082
4V87|1|DA|U|1083
4V87|1|DA|A|1084
4V87|1|DA|A|1085
4V87|1|DA|A|1086
4V87|1|DA|G|1087
4V87|1|DA|A|1088
4V87|1|DA|G|1089
4V87|1|DA|U|1090
4V87|1|DA|G|1091
*
4V87|1|DA|C|1100
4V87|1|DA|U|1101
4V87|1|DA|C|1102
4V87|1|DA|A|1103
4V87|1|DA|C|1104

Current chains

Chain DA

RNA (2909-MER)

Nearby chains