J3_4V88_010

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V88_010 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.0613

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4V88|1|A1|C|3298
4V88|1|A1|A|3299
4V88|1|A1|U|3300
*
4V88|1|A1|A|3314
4V88|1|A1|G|3315
4V88|1|A1|A|3316
4V88|1|A1|U|3317
4V88|1|A1|G|3318
*
4V88|1|A1|C|3388
4V88|1|A1|U|3389
4V88|1|A1|G|3390

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BP

60S ribosomal protein L17-A

Chain Bd

60S ribosomal protein L31-A