J3_4V88_012
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V88|1|A2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_012 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0741
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A2|A|881
4V88|1|A2|U|882
4V88|1|A2|C|883
4V88|1|A2|A|884
*
4V88|1|A2|U|928
4V88|1|A2|A|929
4V88|1|A2|A|930
4V88|1|A2|C|931
4V88|1|A2|U|932
4V88|1|A2|A|933
4V88|1|A2|C|934
4V88|1|A2|U|935
4V88|1|A2|G|936
*
4V88|1|A2|C|943
4V88|1|A2|A|944
4V88|1|A2|U|945
4V88|1|A2|U|946
4V88|1|A2|U|947
Current chains
- Chain A2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S1-A
- Chain AN
- 40S ribosomal protein S13
- Chain AO
- 40S ribosomal protein S14-A
- Chain Aa
- 40S ribosomal protein S26-A
- Chain Bp
- 60S ribosomal protein L43-A
Coloring options: