J3_4V88_021
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 4V88|1|A5|U|117, 4V88|1|A5|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_021 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.0542
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A5|C|113
4V88|1|A5|A|114
4V88|1|A5|A|115
4V88|1|A5|A|116
4V88|1|A5|U|117
4V88|1|A5|U|118
4V88|1|A5|U|119
4V88|1|A5|G|120
4V88|1|A5|A|121
4V88|1|A5|A|122
4V88|1|A5|A|123
*
4V88|1|A5|U|149
4V88|1|A5|A|150
4V88|1|A5|A|151
4V88|1|A5|U|152
4V88|1|A5|U|153
4V88|1|A5|U|154
4V88|1|A5|G|155
4V88|1|A5|G|156
4V88|1|A5|A|157
4V88|1|A5|G|158
*
4V88|1|A5|C|263
4V88|1|A5|G|264
4V88|1|A5|A|265
4V88|1|A5|A|266
4V88|1|A5|G|267
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain DG
- 60S ribosomal protein L8-A
- Chain DL
- 60S ribosomal protein L13-A
- Chain DN
- 60S ribosomal protein L15-A
- Chain Dh
- 60S ribosomal protein L35-A
- Chain Di
- 60S ribosomal protein L36-A
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